菌种鉴定结果示例

PBGdango

1 预测结果

Vibrio parahaemolyticus

├────界：Bacteria
├────────门： Proteobacteria
├────────────纲: Gammaproteobacteria
├───────────────目: Vibrionales
├──────────────────科： Vibrionaceae
├─────────────────────属：Vibrio

点击下载: Taxonomy.xls

2 Average Nucleotide Identity

ANI and AF vs Type material Genome
GENOME1	GENOME2	ANI(1->2)	ANI(2->1)	AF(1->2)	AF(2->1)
Vibrio_parahaemolyticus.ffn	GCA_000813305.1	98.41	98.40	0.92	0.94
Vibrio_parahaemolyticus.ffn	GCA_001011015.1	98.41	98.41	0.91	0.94
Vibrio_parahaemolyticus.ffn	GCA_001558495.2	98.41	98.41	0.92	0.92
Vibrio_parahaemolyticus.ffn	GCA_001998785.1	98.41	98.41	0.92	0.93

点击下载: ANIcalculator.all.xls

基因统计表
Gene_num	349
Gene_total_length(bp)	313,764
Gene_average_length(bp)	899.04
GC_content_in_gene_region(%)	32.67
Gene/Genome(%)	86.48
Intergenetic_region_length(bp)	49,050
GC_content_in_intergenetic_region(%)	27.05
Intergenetic/Genome(%)	13.52

3 MLST分型

MLST分型结果为：ST88，管家基因编号：

ST	dnaE	gyrB	recA	dtdS	pntA	pyrC	tnaA
88	11	48	43	48	26	48	26

点击下载: MLST.STtype.txt

Query	Target	identity(%)	Alignment length	mismatches	gap opens	Start position in query	End position in query	Start position in target	End position in target	E-value	score
CP003972.1	dnaE_11	100.000	557	0	0	2351981	2352537	1	557	0.0	1029
CP003972.1	gyrB_48	100.000	592	0	0	12027	12618	1	592	0.0	1094
CP003972.1	recA_43	100.000	729	0	0	2659327	2660055	729	1	0.0	1347
CP003973.1	dtdS_48	100.000	458	0	0	1553747	1554204	458	1	0.0	846
CP003973.1	pntA_26	100.000	430	0	0	941548	941977	430	1	0.0	795
CP003973.1	pyrC_48	100.000	493	0	0	402861	403353	493	1	0.0	911
CP003973.1	tnaA_26	100.000	423	0	0	191365	191787	1	423	0.0	782