Listeria monocytogenes Online 结果示例

PBGdango

1 Species result

Listeria monocytogenes

├────Kingdom：Bacteria
├────────Phylum： Firmicutes
├────────────Class: Bacilli
├───────────────Order: Bacillales
├──────────────────Family： Listeriaceae
├─────────────────────Genus：Listeria

Download: Taxonomy.txt

2 Average Nucleotide Identity

ANI and AF vs Type material Genome
GENOME1	GENOME2	ANI(1->2)	ANI(2->1)	AF(1->2)	AF(2->1)
lm1.genome.ffn	Listeria_monocytogenes.EGD-e.GCA_000196035.1.gene.fa	98.55	98.55	0.88	0.96
lm1.genome.ffn	Listeria_monocytogenes.FSL-F6-684.AODC01.gene.fa	98.58	98.58	0.74	0.96
lm1.genome.ffn	Listeria_monocytogenes.FSL-F6-684.JOOX01.gene.fa	98.58	98.58	0.87	0.97
lm1.genome.ffn	Listeria_monocytogenes.NCTC10357.GCA_900187225.1.gene.fa	98.57	98.57	0.87	0.98

Download: ANIcalculator.all.txt

Gene annotation
Gene_num	3233
Gene_total_length(bp)	2,854,692
Gene_average_length(bp)	882.99
GC_content_in_gene_region(%)	38.45
Gene/Genome(%)	90.19
Intergenetic_region_length(bp)	310,557
GC_content_in_intergenetic_region(%)	32.21
Intergenetic/Genome(%)	9.81

3 Multilocus sequence typing

MLST result：ST121,Housekeeping gene allele number：

ST	abcZ	bglA	cat	dapE	dat	ldh	lhkA
121	7	6	8	8	6	37	1

Download: MLST.STtype.txt

Query	Target	identity(%)	Alignment length	mismatches	gap opens	Start position in query	End position in query	Start position in target	End position in target	E-value	score
LR588199.1	abcZ_7	100.000	537	0	0	304162	304698	537	1	0.0	992
LR588196.1	bglA_6	100.000	399	0	0	99482	99880	399	1	0.0	737
LR588199.1	cat_8	100.000	486	0	0	251320	251805	1	486	0.0	898
LR588196.1	dapE_8	100.000	462	0	0	48087	48548	1	462	0.0	854
LR588198.1	dat_6	100.000	471	0	0	79589	80059	1	471	0.0	870
LR588203.1	ldh_37	100.000	453	0	0	22158	22610	1	453	0.0	837
LR588198.1	lhkA_1	100.000	480	0	0	206352	206831	480	1	0.0	887

4 Resistance gene

result table：

ARoutput.result.txt

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resistance gene table
Query_ID	ARO_Accession	Protein	Identities	ARO Name	Model_type	SNPs_in_Best_Hit_ARO	Other_SNPs	Drug Class	Resistance Mechanism	AMR Gene Family
CM001469.1\|1411905:1414499	ARO:3003770	NP_465220.1	98.15	Listeria monocytogenes mprF	protein homolog model	n/a	n/a	peptide antibiotic	antibiotic target alteration	defensin resistant mprF
CM001469.1\|1418707:1419108	ARO:3000198	CWV56762.1	90.23	FosX	protein homolog model	n/a	n/a	fosfomycin	antibiotic inactivation	fosfomycin thiol transferase
CM001469.1\|2502804:2504204	ARO:3000421	CCQ22388.1	98.5	norB	protein homolog model	n/a	n/a	fluoroquinolone antibiotic	antibiotic efflux	major facilitator superfamily (MFS) antibiotic efflux pump

Showing 1 to 3 entries，after selected get 3 entries ,1 pages in all

5 Virulence factor

result table：

1. VFDB.filter.txt

2. VFDB.allinfo.txt

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Virulence factor table
Query_id	%Identity	E-value	Related genes	Virulence factors	Class	Description	Strain
LR588196.1\|100152:101351	100.000	0.0	vip	Virulence protein (LPXTG protein)	Invasion	(vip) Chromosomal replication initiator protein DnaA [Virulence protein (LPXTG protein) (CVF235)] [Listeria monocytogenes str. La111]	Listeria monocytogenes str. La111
LR588196.1\|194793:196193	100.000	0.0	pdgA	PdgA	Peptidoglycan modification	(pdgA) polysaccharide deacetylase family protein [PdgA (CVF675)] [Listeria monocytogenes SLCC5850]	Listeria monocytogenes SLCC5850
LR588196.1\|211846:213321	98.982	0.0	inlA	Internalin A (LPXTG protein)	Invasion	(inlA) internalin A protein InlA, N-terminal part [Internalin A (LPXTG protein) (CVF230)] [Listeria monocytogenes SLCC2479]	Listeria monocytogenes SLCC2479
LR588196.1\|213355:214248	97.643	0.0	inlA	Internalin A (LPXTG protein)	Invasion	(inlA) internalin A [Internalin A (LPXTG protein) (CVF230)] [Listeria monocytogenes serotype 4b str. F2365]	Listeria monocytogenes serotype 4b str. F2365
LR588196.1\|214333:216225	100.000	0.0	inlB	Internalin B (GW protein)	Invasion	(inlB) Internalin B [Internalin B (GW protein) (CVF231)] [Listeria monocytogenes str. La111]	Listeria monocytogenes str. La111
LR588196.1\|224828:225445	99.512	1.45e-145	lntA	LntA	Immune modulator	(lntA) hypothetical protein [LntA (CVF673)] [Listeria monocytogenes J0161]	Listeria monocytogenes J0161
LR588196.1\|2434:4896	100.000	0.0	clpC	ClpC	Stress protein	(clpC) endopeptidase Clp ATP-binding chain C [ClpC (VF0072)] [Listeria monocytogenes EGD-e]	Listeria monocytogenes EGD-e
LR588196.1\|370669:372099	98.960	0.0	iap/cwhA	Cell wall hydrolase	Invasion	(iap/cwhA) Probable endopeptidase p60 [Cell wall hydrolase (CVF234)] [Listeria monocytogenes N53-1]	Listeria monocytogenes N53-1
LR588196.1\|463857:464624	99.216	0.0	fliP	-GlcNAc	--	(fliP) flagellar biosynthesis protein FliP [-GlcNAc (AI147)] [Listeria monocytogenes EGD-e]	Listeria monocytogenes EGD-e
LR588196.1\|464637:464909	100.000	4.63e-59	fliQ	-GlcNAc	--	(fliQ) flagellar biosynthesis protein FliQ [-GlcNAc (AI147)] [Listeria monocytogenes EGD-e]	Listeria monocytogenes EGD-e

Showing 1 to 10 entries，after selected get 77 entries ,8 pages in all

CGMLST

The Closest Genome: Key Name : FDA00007155 ,Genome information: FDA00007155

CGMLST picture：